PtH2O2lipids

DOI:10.18129/B9.bioc.PtH2O2lipids

This is thedevelopmentversion of PtH2O2lipids; for the stable release version, seePtH2O2lipids.

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

Bioconductor version: Development (3.17)

Annotated HPLC-ESI-MS lipid data in positive ionization mode from an experiment in which cultures of the marine diatom Phaeodactylum tricornutum were treated with various concentrations of hydrogen peroxide (H2O2) to induce oxidative stress. The experiment is described in Graff van Creveld, et al., 2015, "Early perturbation in mitochondria redox homeostasis in response to environmental stress predicts cell fate in diatoms," ISME Journal 9:385-395. PtH2O2lipids consists of two objects: A CAMERA xsAnnotate object (ptH2O2lipids$xsAnnotate) and LOBSTAHS LOBSet object (ptH2O2lipids$xsAnnotate$LOBSet). The LOBSet includes putative compound assignments from the default LOBSTAHS database. Isomer annotation is recorded in three other LOBSet slots.

Author: Shiri Graff van Creveld [aut], Shilo Rosenwasser [aut], Daniella Schatz [aut], Ilan Koren [aut], Assaf Vardi [aut], James Collins [cre]

Maintainer: James Collins

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("PtH2O2lipids")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CellCulture,ExperimentData,MassSpectrometryData,Phaeodactylum_tricornutum_data,ReproducibleResearch
Version	1.25.0
License	MIT + file LICENSE
Depends	R (>= 3.3),xcms,CAMERA,LOBSTAHS, methods, utils
Imports
LinkingTo
Suggests	gplots,RColorBrewer,集群,vegan
SystemRequirements
Enhances
URL	http://dx.doi.org/10.1038/ismej.2014.136https://github.com/vanmooylipidomics/PtH2O2lipidshttp://www.whoi.edu/page.do?pid=133616&tid=282&cid=192529
BugReports	https://github.com/vanmooylipidomics/PtH2O2lipids/issues/new
Depends On Me
Imports Me
Suggests Me	LOBSTAHS
Links To Me
Build Report

Package Archives

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Source Package	PtH2O2lipids_1.25.0.tar.gz
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macOS Binary (x86_64)
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Source Repository	git clone https://git.bioconductor.org/packages/PtH2O2lipids
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PtH2O2lipids
Package Short Url	//www.andersvercelli.com/packages/PtH2O2lipids/
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