AlphaBeta

DOI:10.18129/B9.bioc.AlphaBeta

Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

Bioconductor version: Release (3.13)

AlphaBeta is a computational method for estimating epimutation rates and spectra from high-throughput DNA methylation data in plants. The method has been specifically designed to: 1. analyze 'germline' epimutations in the context of multi-generational mutation accumulation lines (MA-lines). 2. analyze 'somatic' epimutations in the context of plant development and aging.

Author: Yadollah Shahryary Dizaji [cre, aut], Frank Johannes [aut], Rashmi Hazarika [aut]

Maintainer: Yadollah Shahryary Dizaji

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("AlphaBeta")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("AlphaBeta")

PDF	R Script	AlphaBeta
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯
Version	1.6.0
In Bioconductor since	BioC 3.10 (R-3.6) (1.5 years)
License	GPL-3
Depends	R (>= 3.6.0)
Imports	dplyr(>= 0.7),data.table(>= 1.10),stringr(>= 1.3), utils (>= 3.6.0),gtools(>= 3.8.0),optimx(>= 2018-7.10),expm(>= 0.999-4), stats (>= 3.6),BiocParallel(>= 1.18),igraph(>= 1.2.4), graphics (>= 3.6),ggplot2(>= 3.2), grDevices (>= 3.6),plotly(>= 4.9)
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Suggests	knitr,rmarkdown
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Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	AlphaBeta_1.6.0.tar.gz
Windows Binary	AlphaBeta_1.6.0.zip
macOS 10.13 (High Sierra)	AlphaBeta_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AlphaBeta
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AlphaBeta
Package Short Url	//www.andersvercelli.com/packages/AlphaBeta/
Package Downloads Report	Download Stats