| biocViews |
2021年欧洲杯
,2021年欧洲杯
,2021年欧洲杯
,2021年欧洲杯
,2021年欧洲杯
,2021年欧洲杯
,2021年欧洲杯
|
| 版本 |
1.58.0 |
| Bioconductor自 |
BIOC 1.9（R-2.4）（14.5岁） |
| 许可证 |
艺术- 2.0 |
| 取决于 |
R(>= 2.8.0)，方法BiocGenerics(> = 0.13.8),S4Vectors(> = 0.17.28),绞喉（> = 2.13.16），Genomeinfodb.(> = 1.25.6),Genomicranges.(> = 1.31.10),Biostrings(> = 2.47.6),rtracklayer.(> = 1.39.7) |
| 进口 |
方法，Utils，统计数据，MatrixStats.,BiocGenerics,S4Vectors,绞喉,XVector（> = 0.29.3），Genomeinfodb.,Genomicranges.,Biostrings,Rsamtools,rtracklayer. |
| 链接 |
|
| 建议 |
BiocManager,BioBase.,BSgenome.Celegans.UCSC.ce2,bsgenome.hsapiens.ucsc.hg38,bsgenome.hsapiens.ucsc.hg38.masked.,BSgenome.Mmusculus.UCSC.mm10,BSgenome.Rnorvegicus.UCSC.rn5,bsgenome.scerevisiae.ucsc.saccer1.,bsgenome.hsapiens.ncbi.grch38.,txdb.hsapiens.ucsc.hg38.knowngene.,txdb.mmusculus.ucsc.mm10.knowngene.,SNPlocs.Hsapiens.dbSNP144.GRCh38,xtrasnplocs.hsapiens.dbsnp144.grch38.,hgu95av2probe,RUnit |
| 系统要求 |
|
| 增强了 |
|
| URL |
//www.andersvercelli.com/packages/BSgenome |
| Bugreports. |
https://github.com/Bioconductor/BSgenome/issues |
| 取决于我 |
注释,bsgenome.alyrata.jgi.v1,BSgenome.Amellifera.BeeBase.assembly4,BSgenome.Amellifera.NCBI.AmelHAv3.1,BSgenome.Amellifera.UCSC.apiMel2,BSgenome.Amellifera.UCSC.apiMel2.masked,bsgenome.aoffIninalis.ncbi.v1,BSgenome.Athaliana.TAIR.04232008,bsgenome.athalana.tair.tair9.,BSgenome.Btaurus.UCSC.bosTau3,bsgenome.btaurus.ucsc.bostau3.masked.,BSgenome.Btaurus.UCSC.bosTau4,BSgenome.Btaurus.UCSC.bosTau4.masked,BSgenome.Btaurus.UCSC.bosTau6,bsgenome.btaurus.ucsc.bostau6.masked.,BSgenome.Btaurus.UCSC.bosTau8,BSgenome.Btaurus.UCSC.bosTau9,BSgenome.Carietinum.NCBI.v1,bsgenome.celegans.ucsc.CE10,bsgenome.celegans.ucsc.CE11,BSgenome.Celegans.UCSC.ce2,BSgenome.Celegans.UCSC.ce6,BSgenome.Cfamiliaris.UCSC.canFam2,BSgenome.Cfamiliaris.UCSC.canFam2.masked,BSgenome.Cfamiliaris.UCSC.canFam3,BSgenome.Cfamiliaris.UCSC.canFam3.masked,bsgenome.cjacchus.ucsc.caljac3.,bsgenome.creinhardtii.jgi.v5.6,BSgenome.Dmelanogaster.UCSC.dm2,bsgenome.dmelanogaster.ucsc.dm2.masked.,BSgenome.Dmelanogaster.UCSC.dm3,bsgenome.dmelanogaster.ucsc.dm3.masked.,BSgenome.Dmelanogaster.UCSC.dm6,bsgenome.drerio.ucsc.danrer10.,bsgenome.drerio.ucsc.danrer11,BSgenome.Drerio.UCSC.danRer5,BSgenome.Drerio.UCSC.danRer5.masked,BSgenome.Drerio.UCSC.danRer6,BSgenome.Drerio.UCSC.danRer6.masked,BSgenome.Drerio.UCSC.danRer7,BSgenome.Drerio.UCSC.danRer7.masked,BSgenome.Dvirilis.Ensembl.dvircaf1,BSgenome.Ecoli.NCBI.20080805,bsgenome.gaculeatus.ucsc.gasacu1.,bsgenome.gaculeatus.ucsc.gasacu1.masked.,BSgenome.Ggallus.UCSC.galGal3,bsgenome.ggallus.ucsc.galgal3.masked.,BSgenome.Ggallus.UCSC.galGal4,bsgenome.ggallus.ucsc.galgal4.masked.,BSgenome.Ggallus.UCSC.galGal5,BSgenome.Ggallus.UCSC.galGal6,bsgenome.hsapiens.1000Genomes.HS37D5,bsgenome.hsapiens.ncbi.grch38.,bsgenome.hsapiens.ucsc.hg17,BSgenome.Hsapiens.UCSC.hg17.masked,BSgenome.Hsapiens.UCSC.hg18,BSgenome.Hsapiens.UCSC.hg18.masked,bsgenome.hsapiens.ucsc.hg19.,bsgenome.hsapiens.ucsc.hg19.masked.,bsgenome.hsapiens.ucsc.hg38,bsgenome.hsapiens.ucsc.hg38.masked.,bsgenome.mdomboyestma.ucsc.mondom5,bsgenome.mfascicularis.ncbi.5.0,BSgenome.Mfuro.UCSC.musFur1,BSgenome.Mmulatta.UCSC.rheMac10,bsgenome.mmulatta.ucsc.Rhemac2.,BSgenome.Mmulatta.UCSC.rheMac2.masked,bsgenome.mmulatta.ucsc.Rhemac3.,BSgenome.Mmulatta.UCSC.rheMac3.masked,bsgenome.mmulatta.ucsc.Rhemac8.,BSgenome.Mmusculus.UCSC.mm10,BSgenome.Mmusculus.UCSC.mm10.masked,BSgenome.Mmusculus.UCSC.mm8,BSgenome.Mmusculus.UCSC.mm8.masked,BSgenome.Mmusculus.UCSC.mm9,BSgenome.Mmusculus.UCSC.mm9.masked,BSgenome.Osativa.MSU.MSU7,bsgenome.ppaniscus.ucsc.panpan1.,bsgenome.ppaniscus.ucsc.panpan2.,bsgenome.ptroglodytes.ucsc.pantro2.,BSgenome.Ptroglodytes.UCSC.panTro2.masked,bsgenome.ptroglodytes.ucsc.pantro3,bsgenome.ptroglodytes.ucsc.pantro3.masked.,bsgenome.ptroglodytes.ucsc.pantro5.,bsgenome.ptroglodytes.ucsc.pantro6,BSgenome.Rnorvegicus.UCSC.rn4,BSgenome.Rnorvegicus.UCSC.rn4.masked,BSgenome.Rnorvegicus.UCSC.rn5,bsgenome.rnorvegicus.ucsc.rn5.masked.,BSgenome.Rnorvegicus.UCSC.rn6,bsgenome.scerevisiae.ucsc.saccer1.,bsgenome.scerevisiae.ucsc.saccer2.,bsgenome.scerevisiae.ucsc.saccer3.,BSgenome.Sscrofa.UCSC.susScr11,BSgenome.Sscrofa.UCSC.susScr3,BSgenome.Sscrofa.UCSC.susScr3.masked,BSgenome.Tgondii.ToxoDB.7.0,bsgenome.tguttata.ucsc.taegut1,BSgenome.Tguttata.UCSC.taeGut1.masked,bsgenome.tguttata.ucsc.taegut2.,bsgenome.vvinifera.urgi.iggp12xv0.,bsgenome.vvinifera.urgi.iggp12xv2.,BSgenome.Vvinifera.URGI.IGGP8X,ChipanAlyser.,哥特,HelloRanges,Leebamviews.,MEDIPS,季节性ddna.,REDseq,rGADEM,SNPlocs.Hsapiens.dbSNP.20120608,snplocs.hsapiens.dbsnp141.grch38.,SNPlocs.Hsapiens.dbSNP142.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,SNPlocs.Hsapiens.dbSNP149.GRCh38,SNPlocs.Hsapiens.dbSNP150.GRCh38,SNPlocs.Hsapiens.dbSNP151.GRCh38,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,xtrasnplocs.hsapiens.dbsnp144.grch37.,xtrasnplocs.hsapiens.dbsnp144.grch38. |
| 进口我 |
等位基因矛纪,appreci8R,Atacseqqc.,atSNP,打,bsgenome.alyrata.jgi.v1,BSgenome.Amellifera.BeeBase.assembly4,BSgenome.Amellifera.NCBI.AmelHAv3.1,BSgenome.Amellifera.UCSC.apiMel2,BSgenome.Amellifera.UCSC.apiMel2.masked,bsgenome.aoffIninalis.ncbi.v1,BSgenome.Athaliana.TAIR.04232008,bsgenome.athalana.tair.tair9.,BSgenome.Btaurus.UCSC.bosTau3,bsgenome.btaurus.ucsc.bostau3.masked.,BSgenome.Btaurus.UCSC.bosTau4,BSgenome.Btaurus.UCSC.bosTau4.masked,BSgenome.Btaurus.UCSC.bosTau6,bsgenome.btaurus.ucsc.bostau6.masked.,BSgenome.Btaurus.UCSC.bosTau8,BSgenome.Btaurus.UCSC.bosTau9,BSgenome.Carietinum.NCBI.v1,bsgenome.celegans.ucsc.CE10,bsgenome.celegans.ucsc.CE11,BSgenome.Celegans.UCSC.ce2,BSgenome.Celegans.UCSC.ce6,BSgenome.Cfamiliaris.UCSC.canFam2,BSgenome.Cfamiliaris.UCSC.canFam2.masked,BSgenome.Cfamiliaris.UCSC.canFam3,BSgenome.Cfamiliaris.UCSC.canFam3.masked,bsgenome.cjacchus.ucsc.caljac3.,bsgenome.creinhardtii.jgi.v5.6,BSgenome.Dmelanogaster.UCSC.dm2,bsgenome.dmelanogaster.ucsc.dm2.masked.,BSgenome.Dmelanogaster.UCSC.dm3,bsgenome.dmelanogaster.ucsc.dm3.masked.,BSgenome.Dmelanogaster.UCSC.dm6,bsgenome.drerio.ucsc.danrer10.,bsgenome.drerio.ucsc.danrer11,BSgenome.Drerio.UCSC.danRer5,BSgenome.Drerio.UCSC.danRer5.masked,BSgenome.Drerio.UCSC.danRer6,BSgenome.Drerio.UCSC.danRer6.masked,BSgenome.Drerio.UCSC.danRer7,BSgenome.Drerio.UCSC.danRer7.masked,BSgenome.Dvirilis.Ensembl.dvircaf1,BSgenome.Ecoli.NCBI.20080805,bsgenome.gaculeatus.ucsc.gasacu1.,bsgenome.gaculeatus.ucsc.gasacu1.masked.,BSgenome.Ggallus.UCSC.galGal3,bsgenome.ggallus.ucsc.galgal3.masked.,BSgenome.Ggallus.UCSC.galGal4,bsgenome.ggallus.ucsc.galgal4.masked.,BSgenome.Ggallus.UCSC.galGal5,BSgenome.Ggallus.UCSC.galGal6,bsgenome.hsapiens.ncbi.grch38.,bsgenome.hsapiens.ucsc.hg17,BSgenome.Hsapiens.UCSC.hg17.masked,BSgenome.Hsapiens.UCSC.hg18,BSgenome.Hsapiens.UCSC.hg18.masked,bsgenome.hsapiens.ucsc.hg19.,bsgenome.hsapiens.ucsc.hg19.masked.,bsgenome.hsapiens.ucsc.hg38,bsgenome.hsapiens.ucsc.hg38.masked.,bsgenome.mdomboyestma.ucsc.mondom5,bsgenome.mfascicularis.ncbi.5.0,BSgenome.Mfuro.UCSC.musFur1,BSgenome.Mmulatta.UCSC.rheMac10,bsgenome.mmulatta.ucsc.Rhemac2.,BSgenome.Mmulatta.UCSC.rheMac2.masked,bsgenome.mmulatta.ucsc.Rhemac3.,BSgenome.Mmulatta.UCSC.rheMac3.masked,bsgenome.mmulatta.ucsc.Rhemac8.,BSgenome.Mmusculus.UCSC.mm10,BSgenome.Mmusculus.UCSC.mm10.masked,BSgenome.Mmusculus.UCSC.mm8,BSgenome.Mmusculus.UCSC.mm8.masked,BSgenome.Mmusculus.UCSC.mm9,BSgenome.Mmusculus.UCSC.mm9.masked,BSgenome.Osativa.MSU.MSU7,bsgenome.ppaniscus.ucsc.panpan1.,bsgenome.ppaniscus.ucsc.panpan2.,bsgenome.ptroglodytes.ucsc.pantro2.,BSgenome.Ptroglodytes.UCSC.panTro2.masked,bsgenome.ptroglodytes.ucsc.pantro3,bsgenome.ptroglodytes.ucsc.pantro3.masked.,bsgenome.ptroglodytes.ucsc.pantro5.,bsgenome.ptroglodytes.ucsc.pantro6,BSgenome.Rnorvegicus.UCSC.rn4,BSgenome.Rnorvegicus.UCSC.rn4.masked,BSgenome.Rnorvegicus.UCSC.rn5,bsgenome.rnorvegicus.ucsc.rn5.masked.,BSgenome.Rnorvegicus.UCSC.rn6,bsgenome.scerevisiae.ucsc.saccer1.,bsgenome.scerevisiae.ucsc.saccer2.,bsgenome.scerevisiae.ucsc.saccer3.,BSgenome.Sscrofa.UCSC.susScr11,BSgenome.Sscrofa.UCSC.susScr3,BSgenome.Sscrofa.UCSC.susScr3.masked,BSgenome.Tgondii.ToxoDB.7.0,bsgenome.tguttata.ucsc.taegut1,BSgenome.Tguttata.UCSC.taeGut1.masked,bsgenome.tguttata.ucsc.taegut2.,bsgenome.vvinifera.urgi.iggp12xv0.,bsgenome.vvinifera.urgi.iggp12xv2.,BSgenome.Vvinifera.URGI.IGGP8X,BSSeq.,BUSpaRse,篮球选手,chromVAR,Circrnaprofiler,cleanUpdTSeq,Crispseek.,crisprseekplus,Diffhic.,dpeak.,enrichTF,esatac.,eventPointer.,exomePeak2,fitCons.UCSC.hg19,弗雷泽,GCAPC.,genomation,GenVisR,ggbio,GMAPR.,格雷比亚斯核糖,GUIDEseq,GVIZ.,Hiannotator.,InPAS,IsoformSwitchAnalyzeR,MADSEQ,MafDb.1Kgenomes.phase1.GRCh38,mafdb.1kgenomes.phase1.hs37d5.,mafdb.1kgenomes.phase3.grch38.,MafDb.1Kgenomes.phase3.hs37d5,mafdb.exac.r1.0.grch38.,MafDb.ExAC.r1.0.hs37d5,mafdb.exac.r1.0.nontcga.grch38.,MafDb.ExAC.r1.0.nonTCGA.hs37d5,MafDb.gnomAD.r2.1.GRCh38,mafdb.gnomad.r2.1.hs37d5.,mafdb.gnomad.r3.0.grch38.,mafdb.gnomadex.r2.1.grch38.,mafdb.gnomadex.r2.1.hs37d5.,MafDb.TOPMed.freeze5.hg19,MafDb.TOPMed.freeze5.hg38,mafh5.gnomad.r3.0.grch38.,methrix.,Methylseekr.,mmdiff2.,MotifBreakr.,motifmatchr,msgbsr.,多射线,musicatk,MutationalPatterns,orfik.,phastCons100way.UCSC.hg19,phastCons100way.UCSC.hg38,phastCons7way.UCSC.hg38,平,pipeFrame,podkat,qsea,QuasR,r453plus1toolbox.,RareVariantVis,美国广播公司,地区,重新,Repitools,RibosomeProfiling QC,RNAmodR,scmeth,范围,seqplots.,SigsPack,SNPlocs.Hsapiens.dbSNP.20120608,snplocs.hsapiens.dbsnp141.grch38.,SNPlocs.Hsapiens.dbSNP142.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,SNPlocs.Hsapiens.dbSNP149.GRCh38,SNPlocs.Hsapiens.dbSNP150.GRCh38,SNPlocs.Hsapiens.dbSNP151.GRCh38,SparseSignatures,Tapseq.,TFBStools.,特纳,tRNAscanImport,Ularcirc,UMI4Cats,VariantAnnotation,变型滤波器,Varianttools.,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,xtrasnplocs.hsapiens.dbsnp144.grch37.,xtrasnplocs.hsapiens.dbsnp144.grch38. |
| 建议我 |
bambu,Biostrings,Biovizbase.,Chippeakanno.,chipseq,easyRNASeq,eisaR,Generegionscan.,Genomeinfodb.,基因管理,GenomicFeatures,Genomicranges.,Genoset.,maftools,metaseqr.,METASEQR2.,幻影,高伦雅芙,Pwmenrich.,QDNASEQ.,收回,rtracklayer.,snplocs.hsapiens.dbsnp.20101109 |
| 链接给我 |
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| 建立报告 |
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