EpiTxDb

DOI:10.18129/B9.bioc.EpiTxDb

Storing and accessing epitranscriptomic information using the AnnotationDbi interface

Bioconductor版本:版本(3.15)

EpiTxDb facilitates the storage of epitranscriptomic information. More specifically, it can keep track of modification identity, position, the enzyme for introducing it on the RNA, a specifier which determines the position on the RNA to be modified and the literature references each modification is associated with.

Author: Felix G.M. Ernst [aut, cre]

Maintainer: Felix G.M. Ernst

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("EpiTxDb")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EpiTxDb")

HTML	R Script	EpiTxDb
HTML	R Script	EpiTxDb-creation
PDF		Reference Manual
Text		NEWS

Details

biocViews	2021年欧洲杯 ,2021年欧洲杯
Version	1.8.0
In Bioconductor since	BioC 3.11 (R-4.0) (2 years)
License	Artistic-2.0
Depends	R (>= 4.0),AnnotationDbi,Modstrings
Imports	methods, utils,httr,xml2,curl,GenomicFeatures,GenomicRanges,GenomeInfoDb,BiocGenerics,BiocFileCache,S4Vectors,IRanges,RSQLite,DBI,Biostrings,tRNAdbImport
LinkingTo
Suggests	BiocStyle,knitr,rmarkdown,testthat,httptest,AnnotationHub,ensembldb,ggplot2,EpiTxDb.Hs.hg38,BSgenome.Hsapiens.UCSC.hg38,BSgenome.Scerevisiae.UCSC.sacCer3,TxDb.Hsapiens.UCSC.hg38.knownGene
SystemRequirements
Enhances
URL	https://github.com/FelixErnst/EpiTxDb
BugReports	https://github.com/FelixErnst/EpiTxDb/issues
Depends On Me	EpiTxDb.Hs.hg38,EpiTxDb.Mm.mm10,EpiTxDb.Sc.sacCer3
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	EpiTxDb_1.8.0.tar.gz
Windows Binary	EpiTxDb_1.8.0.zip
macOS 10.13 (High Sierra)	EpiTxDb_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/EpiTxDb
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EpiTxDb
Package Short Url	//www.andersvercelli.com/packages/EpiTxDb/
Package Downloads Report	Download Stats