Polyfit

DOI:10.18129/B9.bioc.Polyfit

This package isdeprecated. It will probably be removed from Bioconductor. Please refer to thepackage end-of-life guidelinesfor more information.

Add-on to DESeq to improve p-values and q-values

Bioconductor version: Release (3.13)

Polyfit is an add-on to the packages DESeq which ensures the p-value distribution is uniform over the interval [0, 1] for data satisfying the null hypothesis of no differential expression, and uses an adpated Storey-Tibshiran method to calculate q-values.

Author: Conrad Burden

Maintainer: Conrad Burden

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("Polyfit")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯
Version	1.26.0
In Bioconductor since	BioC 3.0 (R-3.1) (6.5 years)
License	GPL (>= 3)
Depends	DESeq
Imports
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

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Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/Polyfit
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Polyfit
Package Short Url	//www.andersvercelli.com/packages/Polyfit/
Package Downloads Report	Download Stats