RiboDiPA

DOI:10.18129/B9.bioc.RiboDiPA

Differential pattern analysis for Ribo-seq data

Bioconductor版本:版本(3.15)

This package performs differential pattern analysis for Ribo-seq data. It identifies genes with significantly different patterns in the ribosome footprint between two conditions. RiboDiPA contains five major components including bam file processing, P-site mapping, data binning, differential pattern analysis and footprint visualization.

Author: Keren Li [aut], Matt Hope [aut], Xiaozhong Wang [aut], Ji-Ping Wang [aut, cre]

Maintainer: Ji-Ping Wang

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("RiboDiPA")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RiboDiPA")

HTML	R Script	RiboDiPA
PDF		Reference Manual
Text		NEWS

Details

biocViews	2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯
Version	1.4.1
In Bioconductor since	BioC 3.13 (R-4.1) (1 year)
License	LGPL (>= 3)
Depends	R (>= 4.1),Rsamtools,GenomicFeatures,GenomicAlignments
Imports	Rcpp(>= 1.0.2), graphics, stats,data.table,elitism, methods,S4Vectors,IRanges,GenomicRanges,matrixStats,reldist,doParallel,foreach, parallel,qvalue,DESeq2,ggplot2,BiocFileCache,BiocGenerics
LinkingTo	Rcpp
Suggests	knitr,rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	RiboDiPA_1.4.1.tar.gz
Windows Binary	RiboDiPA_1.4.1.zip(64-bit only)
macOS 10.13 (High Sierra)	RiboDiPA_1.4.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RiboDiPA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RiboDiPA
Package Short Url	//www.andersvercelli.com/packages/RiboDiPA/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.15	Source Archive