breakpointR

DOI:10.18129/B9.bioc.breakpointR

Find breakpoints in Strand-seq data

Bioconductor version: Release (3.13)

This package implements functions for finding breakpoints, plotting and export of Strand-seq data.

Author: David Porubsky, Ashley Sanders, Aaron Taudt

Maintainer: David Porubsky

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("breakpointR")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("breakpointR")

PDF	R Script	How to use breakpointR
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯
Version	1.10.0
In Bioconductor since	BioC 3.8 (R-3.5) (2.5 years)
License	fileLICENSE
Depends	R (>= 3.5),GenomicRanges,cowplot,breakpointRdata
Imports	methods, utils, grDevices, stats,S4Vectors,GenomeInfoDb(>= 1.12.3),IRanges,Rsamtools,GenomicAlignments,ggplot2,BiocGenerics,gtools,doParallel,foreach
LinkingTo
Suggests	knitr,BiocStyle,testthat
SystemRequirements
Enhances
URL	https://github.com/daewoooo/BreakPointR
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	breakpointR_1.10.0.tar.gz
Windows Binary	breakpointR_1.10.0.zip
macOS 10.13 (High Sierra)	breakpointR_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/breakpointR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/breakpointR
Package Short Url	//www.andersvercelli.com/packages/breakpointR/
Package Downloads Report	Download Stats