clustifyr

DOI:10.18129/B9.bioc.clustifyr

Classifier for Single-cell RNA-seq Using Cell Clusters

Bioconductor version: Release (3.13)

Package designed to aid in classifying cells from single-cell RNA sequencing data using external reference data (e.g., bulk RNA-seq, scRNA-seq, microarray, gene lists). A variety of correlation based methods and gene list enrichment methods are provided to assist cell type assignment.

Author: Rui Fu [aut, cre], Kent Riemondy [aut], Austin Gillen [ctb], Chengzhe Tian [ctb], Jay Hesselberth [ctb], Yue Hao [ctb], Michelle Daya [ctb], Sidhant Puntambekar [ctb]

Maintainer: Rui Fu

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("clustifyr")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("clustifyr")

HTML	R Script	geo-annotations
HTML	R Script	Introduction to clustifyr
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯
Version	1.4.0
In Bioconductor since	BioC 3.11 (R-4.0) (1 year)
License	MIT + fileLICENSE
Depends	R (>= 4.0)
Imports	cowplot,dplyr,entropy,fgsea,ggplot2,Matrix,readr,rlang,scales,stringr,tibble,tidyr, stats, methods,SingleCellExperiment,SummarizedExperiment,matrixStats,S4Vectors,proxy,httr, utils
LinkingTo
Suggests	ComplexHeatmap,covr,knitr,rmarkdown,testthat,ggrepel,BiocStyle,BiocManager,remotes,shiny,gprofiler2,purrr
SystemRequirements
Enhances
URL	http://github.com/rnabioco/clustifyr#readmehttps://rnabioco.github.io/clustifyr/
BugReports	https://github.com/rnabioco/clustifyr/issues
Depends On Me
Imports Me
Suggests Me	clustifyrdatahub
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	clustifyr_1.4.0.tar.gz
Windows Binary	clustifyr_1.4.0.zip
macOS 10.13 (High Sierra)	clustifyr_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/clustifyr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/clustifyr
Package Short Url	//www.andersvercelli.com/packages/clustifyr/
Package Downloads Report	Download Stats