lionessR

DOI:10.18129/B9.bioc.lionessR

Modeling networks for individual samples using LIONESS

Bioconductor版本:版本(3.15)

LIONESS, or Linear Interpolation to Obtain Network Estimates for Single Samples, can be used to reconstruct single-sample networks (https://arxiv.org/abs/1505.06440). This code implements the LIONESS equation in the lioness function in R to reconstruct single-sample networks. The default network reconstruction method we use is based on Pearson correlation. However, lionessR can run on any network reconstruction algorithms that returns a complete, weighted adjacency matrix. lionessR works for both unipartite and bipartite networks.

Author: Marieke Lydia Kuijjer [aut], Ping-Han Hsieh [cre]

Maintainer: Ping-Han Hsieh

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("lionessR")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看documentation for the version of this package installed in your system, start R and enter:

browseVignettes("lionessR")

HTML	R Script	lionessR
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯
Version	1.10.0
In Bioconductor since	BioC 3.10 (R-3.6) (2.5 years)
License	MIT + fileLICENSE
Depends	R (>= 3.6.0)
Imports	stats,SummarizedExperiment,S4Vectors
LinkingTo
Suggests	knitr,rmarkdown,igraph,reshape2,limma
SystemRequirements
Enhances
URL	https://github.com/mararie/lionessR
BugReports	https://github.com/mararie/lionessR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	lionessR_1.10.0.tar.gz
Windows Binary	lionessR_1.10.0.zip(64-bit only)
macOS 10.13 (High Sierra)	lionessR_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/lionessR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/lionessR
Package Short Url	//www.andersvercelli.com/packages/lionessR/
Package Downloads Report	Download Stats