packFinder

DOI:10.18129/B9.bioc.packFinder

de novo Annotation of Pack-TYPE Transposable Elements

Bioconductor version: Release (3.13)

Algorithm and tools for in silico pack-TYPE transposon discovery. Filters a given genome for properties unique to DNA transposons and provides tools for the investigation of returned matches. Sequences are input in DNAString format, and ranges are returned as a dataframe (in the format returned by as.dataframe(GRanges)).

Author: Jack Gisby [aut, cre], Marco Catoni [aut]

Maintainer: Jack Gisby

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("packFinder")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("packFinder")

HTML	R Script	packFinder
PDF		Reference Manual
Text		NEWS

Details

biocViews	2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯
Version	1.4.0
In Bioconductor since	BioC 3.11 (R-4.0) (1 year)
License	GPL-2
Depends	R (>= 4.0.0)
Imports	Biostrings,GenomicRanges,kmer,ape, methods,IRanges,S4Vectors
LinkingTo
Suggests	biomartr,knitr,rmarkdown,testthat,dendextend,biocViews,BiocCheck,BiocStyle
SystemRequirements
Enhances
URL	https://github.com/jackgisby/packFinder
BugReports	https://github.com/jackgisby/packFinder/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	packFinder_1.4.0.tar.gz
Windows Binary	packFinder_1.4.0.zip
macOS 10.13 (High Sierra)	packFinder_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/packFinder
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/packFinder
Package Short Url	//www.andersvercelli.com/packages/packFinder/
Package Downloads Report	Download Stats