rgoslin

DOI:10.18129/B9.bioc.rgoslin

Lipid Shorthand Name Parsing and Normalization

Bioconductor版本:版本(3.15)

The R implementation for the Grammar of Succint Lipid Nomenclature parses different short hand notation dialects for lipid names. It normalizes them to a standard name. It further provides calculated monoisotopic masses and sum formulas for each successfully parsed lipid name and supplements it with LIPID MAPS Category and Class information. Also, the structural level and further structural details about the head group, fatty acyls and functional groups are returned, where applicable.

Author: Nils Hoffmann [aut, cre], Dominik Kopczynski [aut]

Maintainer: Nils Hoffmann

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("rgoslin")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rgoslin")

HTML	R Script	Using R Goslin to parse and normalize lipid nomenclature
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯 ,2021年欧洲杯
Version	1.0.0
In Bioconductor since	BioC 3.15 (R-4.2) (< 6 months)
License	MIT + fileLICENSE
Depends
Imports	Rcpp(>= 1.0.3),dplyr
LinkingTo	Rcpp
Suggests	testthat(>= 2.1.0),BiocStyle,knitr,rmarkdown,kableExtra,BiocManager,stringr,ggplot2,tibble,lipidr
SystemRequirements
Enhances
URL	https://github.com/lifs-tools/rgoslin
BugReports	https://github.com/lifs-tools/rgoslin/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	rgoslin_1.0.0.tar.gz
Windows Binary	rgoslin_1.0.0.zip
macOS 10.13 (High Sierra)	rgoslin_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rgoslin
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rgoslin
Package Short Url	//www.andersvercelli.com/packages/rgoslin/
Package Downloads Report	Download Stats