版本1.11.0的更改-------------------------------------------------------新功能（TPQ）o迭代记录比例转换与所有ALDEX一起起作用。方法O ALDEX.R：新的“ Iterate = true”适用于任何ALDEX。方法o新aldex.corr函数使用连续结果o aldex.corr.r：带有旧aldex.corr函数的文件o aldex.r：test =“ cor”或test =“ cor” =“ corr” corr aldex.corr o aldex.r aldex.r：pass ...正确地o将冗余参数添加到aldex.kw，aldex.glm，aldex.corr o删除条件o删除条件o clr@conds for aldex.ttest，aldex.kw，aldex.kw，aldex.glm，aldex.glm，aldex.corr，aldex.corr，aldex，aldex，aldex。----------------------------新功能（TPQ）o新的Aldex.glm函数使用模型矩阵o aldex.r：test =“ kw”调用旧aldex。glm，test =“ glm”调用new aldex.glm o allclasses.r：更改“ conds”插槽，以接受“任何”期望型号矩阵o clr_function.r：tweak coerce.data期望型号矩阵o注意：coerce.data函数替换为较少的代码o clr_ttest.r：roxygyge document o clr_glm.r：old al al al al al al al aldex.glm函数重命名为aldex.kw + roxygenize文档o clr_glm-tpq.r：new aldex.glm使用模型矩阵 + roxygenize document o Plot.aldex.r：无更改 - 与New Aldex.glm O Test-O Test-O Test- o test-o test-o test-o plot.aldex.r o plot.aldex.raldex.kw.r：更新测试以反映更改o aldex2_vignette.rnw：在版本1.10.2中使用aldex.kw在Vignette更改中---新功能（tpq）o添加github存储库的添加读数o让aldex.clr即使在版本1.10.1 -------------------------------------------------------------------------------------------错误修复o修复了一个错误，该错误的顺序影响了1.9.2--------------------------------------.-----------------------------------------------------------------------------------新功能（jrw，gbg）o增加自动选择低方差的高方差相对丰度功能的能力，因为基础o添加了新类和通用定义，以获取用作基础的功能o getDenom函数可以是导出的O更新文档的上述o版本凹凸更改版本1.8.1 ----------------------------------------------------------------------------------------------------------新功能) o rennovated aldex function o new 'test = iterative' uses results of one t-test as 'denom' input to a second o large improvements to function documentation o rennovated aldex.ttest function o "progress bar" tracks progress across Monte-Carlo instances o made aldex.ttest function faster (~300% for 10,000 features) o now uses Wilcox signed rank test when 'paired.test = TRUE' o added aldex.clr method for signature 'matrix' CHANGES IN VERSION 1.5.2 ------------------------- NEW FEATURES o added ability to choose the basis for the clr: all, iqlr, zero or user-defined. useful when dealing with asymmetric datasets (selex, metagenomics, meta-RNA-seq) o updated vignette to show how the basis affects the analysis o made BiocParallel the only parallel package for multicore processing o made zero-replacement a prior probability rather than a pseudocount CHANGES IN VERSION 0.99.2 ------------------------- NEW FEATURES o made aldex.clr into a class o allowed input of SummarizedExperiment object instead of a reads data frame o prioritized use of the BiocParallel package for multicore processing. If BiocParallel is not installed then the parallel package used, if neither packages are installed, then serial processing is used CHANGES IN VERSION 0.99.1 ------------------------- NEW FEATURES o changed conditional tests for multiprocessor use, defaults to FALSE CHANGES IN VERSION 0.99.0 ------------------------- NEW FEATURES o first submission to Bioc-devel