版本1.34.0的更改---------------------------------------------新功能o从ORGDB和CHIPDB软件包中删除UNIGEN包装o添加了构建矫形器的功能。EG.DB软件包，该软件包映射ncbi基因iD在物种之间o rsqlite debet defect of dbgetquery用于数据库更改语句的使用；updated to use dbExecute instead CHANGES IN VERSION 1.28.0 ------------------------ NEW FEATURES o (version 1.27.1) `makeOrgPackage()` supports去本体。CHANGES IN VERSION 1.18.0 ------------------------ MODIFICATIONS o RSQLite deprecated dbGetPreparedQuery/dbSendPreparedQuery;Updated with dbGetQuery/dbSendQuery/dbBind/dbFetch o update for building BioC 3.5 BUG FIXES o Resolve tmp issue, change outputDir to NCBIFilesDir o Fixed a bug in makeOrgPackageFromNCBI when there are no GO terms CHANGES IN VERSION 1.16.0 -------------------------------新功能o添加检查是否在MakedBpackage（）中安装了必需的DB0软件包o添加脚本以创建可行的DATA文件文件修改在chipdb软件包中，模板o更新chipdb软件包模板以加载单位测试中的dbi o允许构建无需构建 - keep -empty -dirs flag o misc code清理 - 描述中没有重复的依赖项 - 在名称空间中解析符号 - 可重复使用的单元测试（新而不是重复使用临时文件） - 避免使用不确定的粘贴（），例如，消息（paste（）） - 使用loadNamespace（）而不是requiend（） - 避免1：n迭代 - sql的格式，例如，）{} else {} o删除未使用的测试/runalltests.rout.save file in anndbpkg-templates o使用https：而不是http：对于NCBI访问o重命名R代码和MAN页面文件与高级功能一致o bump orgdb版本3.4 for 3.4 for 3.4版本o添加显式andotationDbi ::: ncbiorg_db_seedgenerator（）版本1.14.0中的Windows更改------------------------------------新功能o在Orgdbs Sqlite db中构建“ Alias”表，用于青蛙，黑猩猩，恒河和蚊子修改o更新anndbpkg模板to Reference select（）接口o在makeorgpackagefromncbi上工作： - 当在gene_info.gz中找不到税ID时，请尽早发生错误 page o add PFAM and PROSITE man pages to NCBICHIP and NCBIORG package templates o allow passing of directory location in wrapBaseDBPackages() o change format of licence; report current version of AnnotationDbi o modify appendArabidopsisGenes() to check for null 'gene_id' o add DBI to 'Suggests'; load DBI in _dbconn man page o load SQLite in vignettes; no longer free from AnnotationDbi::dbFileConnect() CHANGES IN VERSION 1.8.0 ------------------------ NEW FEATURES o Adds support for making orgDb objects/databases for all NCBI taxIDs where there is sufficient data (for adding to AnnotationHub). This makes objects for 1100 organisms. CHANGES IN VERSION 1.6.0 ------------------------ NEW FEATURES o Adds support for a generalized makeChipPackage() function so that users with a probe that maps to an ID can make a chip package providing only that they have access to an org package (no .db0 package required). o Adds support for making new inparanoid8 databases (for loading into AnnotationHub) CHANGES IN VERSION 1.4.0 ------------------------ NEW FEATURES o adds more general mechanism for creating organism packages. makeOrgPackage() will now allow users to pass in a series of data.frames, and (provided that they are formatted correctly) will compile those into a gene-centric organism package. The aim is to provide a more general mechanism for people who are working on organisms that are off the beaten path. o updates to the documentation (new vignettes) to better clarify how users who need to make new organism packages should do so. CHANGES IN VERSION 1.0.0 ------------------------ o All of the code that used to live in AnnotationDbi but was primarily involved in the creation of new annotation packages now lives here. NEW FEATURES o New biocViews tags have been added to the code that generates all the new Annotation packages. These allow users to search annotation packages by the type of annotation package that they are. So for example you can now quickly list only the TranscriptDb packages by using the web site.