版本1.13.1(2019年7月2日)+操作GmtList对象的函数大幅扩展+所有文档和名称空间现在由roxygen2管理+ readGmt默认读取GMT文件中的唯一基因版本0.99.4(2015年12月23日)+ wmw_test (C函数)被重构版本0.99-1(2014年6月19日)+ read_gmt检查GMT行是否有效;如果不是，它将警告消息打印到错误控制台并跳过该行。+添加以下替代wmwTest，以使下游分析更容易:abs.log10。大,log10。少,abs.log10.two。边，q + 2。侧面测试返回正确的值，如果基因集的长度为0版本0.99-0(2014年6月01日)+将版本重置为0.99-0提交版本1.1-5(2014年6月01日)+添加c级实现的Wilcoxon-Mann-Whitney秩和检验+文档和小图更新为准备提交Bioconductor。版本1.1-0(2013年12月27日)+对BIOS的依赖已通过将C函数复制到包中来解决，以便为公开发布BioQC做好准备。它现在可以安装在BIOS不可用的系统上。+文件的清理和更新。版本1.0-14(2012年11月14日)+添加与Shannon熵相关的一系列函数:entropy, entropyDiversity, entropySpecificity, sampleSpecialization版本1.0-13(2012年11月08日)+添加计算基尼指数的函数gini。它在BIOS库Version 1.0-12(2012年10月21日)中实现了gini_stat函数+如果p-value低于R的阈值(约10E-320)，从而产生-Inf的评分，则使用320的值来避免输出-Inf。 Version 1.0-11 (Sep 20, 2012) + bioqc.Rscript: add command-line option '-appendGmtDesc' to append DESC column in the GMT file to outputs. Version 1.0-10 (Sep 3, 2012) + bioqc.Rscript: add details in the help information of 'chiptype' option + bioqc.Rscript: accepts 'GeneID' and 'GeneSymbol' as chiptype in a case-insensitive manner + Update the gmt file to include a few rat tissues (upstream change by Laura Badi, Sep. 3, 2012) Version 1.0-9 (Jul 12, 2012) + bioqc.Rscript: the threshold input is first transformed by 10^(-threshold) to make inputting threshold easier Version 1.0-8 (Jun 07, 2012) + filterPmat fixes the warning message when threshold is NULL: it is tested before is.na Version 1.0-7 (Jul 06, 2012) + bioqc.Rscript rounds output to two digits Version 1.0-6 (Jun 28, 2012) + Add absLog10p function to take the absolute base-10 logarithm of p-values + Add filterPmat Version 1.0-5 (Jun 27, 2012) + bioqc.Rscript accepts -gmt correctly (before it is -gmtfile) Version 1.0-4 (Jun 27, 2012) + exp.tissuemark.affy.roche.symbols.gmt were updated by L. Badi, removing suspected contaminated samples + bioqc.Rscript maps genes to human orthologues from ChipFetcher-exported files Version 1.0-3 (Jun 21, 2012) + bioqc.Rscript: the dependence on ribiosAnnotation has been simplified: only when chiptype is GeneSymbol, the script does not need ribiosAnnotation + bioqc.Rscript: annotate GeneID and Probesets have been simplified by using syntax from ribiosAnnotation >= 2.0-0 + bioqc.Rscript: Program exists when no valid GeneSymbol could be found. Version 1.0-2 (Jun 19, 2012) + bioqc.Rscript: Fix supported.ct2 bug seen on the UDIS machine + bioqc.Rscript: ribiosIO minimum version 1.0-12 added Version 1.0-1 (Jun 13, 2012) + wmw.test has been made more robust: in case no TRUE exists in sub, the function does not fail and return 0 (statistic) or 1 (p-value) + bioqc.Rscript has been added and published under /SOFT/bi/apps/ribios/scripts Version 1.0-0 (Jun 12, 2012) + Establish the BioQC package + Add methods wmwTest for Wilcoxon-Mann-Whitney test for several data structures used by BIO-QC procedures + wmwTest was (almost) fully documented