-重命名参数sampNLoc -> sample_names_from在open_flowjo_xml -所有解析器(flowjo/cytobank/diva_to_gatingset)现在返回基于cytoset的GatingSet，而不是ncdfFlowSet -将trans参数添加到cytobank_to_gatingset，以允许覆盖从gatingML文件(#76)- gatingset_to_flowjo现在使用一个带有编译转换器的docker镜像:hub.docker.com/r/wjiang2/gs-to-flowjo -一些更新如何flowjo_to_gatingset搜索FCS文件(#77)-添加include_empty_tree选项到flowjo_to_gatingset，以包括没有门的样本-允许gatingset_to_flowjo采取路径到GatingSet存档目录-添加gating_graphGML来取代门控。openCyto的graphGML方法::门控泛型-在分析细胞库实验时，通过面板过滤样本，并添加ce_get_samples，ce_get_panels修复/内部变化-自动缩放的样本FlowJo工作区现在由flowjo_to_gatingset RGLab / cytolib # 33 -处理变更违约stringsAsFactors = FALSE 4.0 R -消除额外的中间文件离开工作区在临时目录解析——开关使用GatingSetList merge_gs_list——解决一些Windows建立问题——从实验::文件系统来提高:文件系统在c++ FlowJo解析器——CytoML XSD添加到安装的变化version 3.10 API Changes - Change handling of quad gates according to RGLab/cytolib#16 - Renaming of methods: - openWorkspace -> open_diva_xml, open_flowjo_xml - cytobankExperiment -> open_cytobank_experiment - cytobank2GatingSet -> cytobank_to_gatingset - parseWorkspace -> flowjo_to_gatingset, diva_to_gatingset - getSampleGroups -> fj_ws_get_sample_groups, diva_get_sample_groups - getSamples -> fj_ws_get_samples, diva_get_samples - getKeywords -> fj_ws_get_keywords - getCompensationMatrices -> ce_get_compensations - getTransformation -> ce_get_transformations - compare.counts -> gs_compare_cytobank_counts - Renaming of classes: - divaWorkspace -> diva_workspace - flowJoWorkspace -> flowjo_workspace - Add CytoML.par.set, CytoML.par.get for setting parameters in CytoML namespace Fixes/internal changes - Make gatingset_to_cytobank export cytobank ML with attribute namespaces - Allow diva_to_gatingset to use compensation matrix from xml - Pass ... args from cytobank_to_gatingset appropriately down to FCS parser - Fix some issues with scaling of gates parsed from Diva workspace (#64) - Guard against unsupported transformations being added to GatingSet during Diva parsing - Switch diva_to_gatingset to using flowjo_log_trans instead of logtGml2_trans - Fix ported flowUtils::xmlTag to enable self-closing tags - Make gating.graphGML lookup tailored gates by FCS name as well as file id - Add some flexibility to getSpilloverMat used in gatingset_to_flowjo Changes in version 1.1.2 - support diva workspace parsing Changes in version 1.0.0 - First submission