版本0.1.25的变化-----------------------------------------更改文档和Vignette的更改。新功能增加了基因名称和奇怪的exonids的支持。版本0.1.11的变化-----------------------------------------------与代码一起添加的并行化可能性，在Gignette中的描述单一的外显子基因忽略了正确。版本0.1.10的变化-------------------------------估计导致Factor'和'估计分支'功能添加为S4方法，在第1.3.2版中加载deseq和dexseq时加载deseq和dexseq时没有更多的问题-----------------------------------------------------------------------------------------------------------重要的用户可见的更改o添加到“rightatelog2foldchanges”版本1.3.3的更改中添加了更多选项和灵活性------------------------------现在有关用户可见的更改o依赖根据因素的水平的顺序。版本1.5.3的变化------------------------对于具有大量的人来说，TRT方法的重要用户可见更改o没有完成或速度问题的样本版本1.5.3 --------------------------------------- the python scripts, that allow the users either to ignore the exonic bins belonging to several genes and treat the genes separately, or merge the genes into an aggregate gene. The equivalent R implementations of the python scripts were finally added. CHANGES IN version 1.7.14 ------------------------- SIGNIFICANT USER-VISIBLE CHANGES o Changes to vignette to provide more of an end-to-end description of the work flow. o Changes to function names to now make two-row tables (TRT) rather than BM the default; changed vignette to reflect this. o Added appendix explaining TRT to vignette. CHANGES IN VERSION 1.9.7 ------------------------- SIGNIFICANT USER-VISIBLE CHANGES o Major code revisions: the ExonCountSet object was deprecated and substituted by the DEXSeqDataSet class, a subclass of the DESeqDataSet. o DEXseq now uses the DESeq2 package as internal engine and backbone for all analyses o All functions and methods for the ExonCountSet object were replaced by new functions o DEXSeq is now better integrated with other Bioconductor packages o We now use knitr to build the vignette CHANGES IN VERSION 1.17.28 ------------------------- o Added support for estimating fold change rates with continous variables. o Reduced RAM usage when parallelizing