版本1.18.1 ------------- o改进的蛋白质推断。现在它有两个选择-要么独特的肽或剃刀。版本1.17.1 ------------- o将工具的范围扩大到免疫肿瘤学-即发现蛋白质序列中反映的罕见事件。版本1.15.1 ------------- o mzR现在添加扫描数字(s)到表表示mzIdentML对象。结果，它在我的单元测试中导致了一个错误，检查文件是否正确读取。修正了这个检查与更新的哈希。版本1.11.1 ------------- o在过滤器优化中从mclapply切换到parLapply。这修复了一个错误“断言失败在kmp_runtime.cpp(6480): __kmp_thread_pool == __null。”也允许并行运行在windows操作系统版本1.7.3 ------------- o逻辑错误修复在PSM FDR计算。在此之前，它忽略了肽到蛋白映射的冗余。 Now protein accession are discarded and unique rows considered before compuring the FDR. o Added unit test to cover new PSM FDR calculation. Version 1.7.2 ------------- o added high performance parser based on mzR::openIDFile Version 1.7.1 ------------- o added infer_parsimonious_accessions method o version leap from 1.3.1 to 1.7.1 to catch up with Bioconductor o fixed conflict between reshape2 and data.table Version 1.3.1 ------------- o S4 methods "accessions" and "proteins" outsourced to ProtGenerics Version 1.1.6 ------------- o Added explicit mc.cores argument for "Grid" type of optimization o Fix of trimming to basename on POSIX Version 1.1.5 ------------- o Always trimming spectrumFile and databaseFile to basename after reading data from mzIdentML files. Version 1.1.4 ------------- o Catching up with changes in mzID package version 1.5.3 Version 1.1.3 ------------- o Updated data, documentation and unit test to reflect the latest changes in mzID Version 1.1.2 ------------- o id_quality and evaluate_filter may have multiple values for the level argument. By default it is all three: "PSM", "peptide" and "accession". The return value for both methods is switched to matrices. o added Laurent Gatto as a contributor Version 1.1.1 ------------- o fix mishandling PSM o use mzR::psms generic Version 1.1.0 ------------- o Bumping versions after creating 3.0 release branch. Version 0.99.3 -------------- o Rcpp back into "Depends" Version 0.99.2 -------------- o Updated Rcpp dependency o Updated contact info to match the bioc-devel mailing list Version 0.99.1 -------------- o Updated dependency on mzID version Version 0.99.0 -------------- o Minor bug fixes o Added unit tests for filter optimization and assessment of non-tryptic and missed cleavages o Version bump for Bioconductor submission Version 0.1.0 -------------- o First release version