Bambu v2.2.0(更改日期:2022-04-27)================================================= =重大更改: *实现了不提供注释的De-Novo模式 *已实现的跟踪读物,以允许用户跟踪读取到“读取”模型映射 *实现的outputdistt,以输出距离读取类别的距离指标读取类和成绩单模型 *允许输入文件,而没有特定扩展名的FASTA和注释GTF文件(GFF等)次要修复程序: *当读取在提供的基因组之外对齐时,请修复错误, * *提供了BSGENOME及其链的警告和问题。*如果没有成绩单通过阈值,则在DENOVO模式下运行时提供了更有信息的错误 * fix fix bug in Runs中,注释基因名称具有“基因” BAMBU v2.0.4(更改日期:2022-02-08)============================================================================次要修复: * fim fim file confiend bounds Ancovered校准读取bug * fix fix fix fix fix fix fix fixBSGENOME Strand Bug *在从头模式和阈值中过低时,请清楚错误 *将NDR移出发现参数列表bambu v2.0.3(更改日期:2022-01-30)==========================================================次要修复: *当未计算TxScore时,请跳过错误BAMBU v2.0.1(更改日期:2022-11-23)==============================================次要修复程序: *使用更新的BIOC 3.14包装BAMBU v2.0.0(更改日期:2021-10-18)====================为了估计成绩单级的新颖发现率 *实施了完整的估计,部分长度估计和最终输出中的唯一读数 *改进了使用简化代码的扩展通道模块的性能 *当缺少大量注释时,提高了性能。*实现了一个低序选项,以减少非常大的样本(> 1亿读)次要修复的记忆要求: *删除get()使用环境变量的使用(如果存在相同名称的变量,则容易崩溃),并且直接引用应使用的功能。 * Fixed the error when a .fa file is provided as a string variable in non-windows system * Fixed the error when no single exon read class is provided in any samples * Fixed the bug when no splice overlap is found between read classes and annotations bambu v1.0.2 (Change date: 2020-11-10) ============== Changes: * Bug fix for author name display * Bug fix for calling fasta file and bam file from ExperimentHub * Update NEWS file bambu v1.0.1 (Change date: 2020-11-06) ============== Changes: * Bug fix for parallel computation to avoid bplapply bambu v0.99.4 (Release date: 2020-08-18) ============== Changes: * Remove codes using seqlevelStyle to allow customized annotation * update the requirement of R version and ExperimentHub version bambu v0.99.1 (Release date: 2020-08-18) ============== * First submission to BioConductor