版本1.12.0 o prepareCellData()现在返回一个List对象,而不是半完整的CyData对象。o expandRadius()和neighbordistance()在prepareCellData()生成的List上显式工作。o countCells()也将计算未使用标记的加权中值强度。较小的错误修正,以避免随机结果,由于数值不精确时,计算中位数。O intensities()有一个新的mode=参数,用于返回未使用标记的强度。1.10.0版更改o删除了已弃用的plotCell*函数。1.8.0版更改修改了plotSphere*()函数,以更灵活地选择颜色。o添加修正。zero= normalizeBatch()中的选项,用于基于范围的规范化。1.6.0版的更改:重新构造CyData类以简化和内部字段。 o Deprecated plotCell* functions, renamed them to plotSphere*. o Added the createColorBar() convenience function. o Removed the diffIntDist() function. o Restored option for quantile normalization in normalizeBatch(). Switched to deterministic algorithm for sampling when mode="warp". Changes in version 1.4.0 o Bug fix to interpreSpheres() when making additional plots. o Switched to custom colour calculation in plotCellIntensity(). Changes in version 1.2.0 o Added labelSpheres() function for labelling unannotated hyperspheres. o Exported multiIntHist() for plotting multiple intensity histograms. o Slight fix to spatialFDR(), which now computes the correct n-th nearest neighbour. Changes in version 1.0.0 o New package cydar, for detecting differential abundance in mass cytometry data.