1.3.2版本的变化用户可见的重大变化——connect_database()中提供的链接已经更新，以便连接到最新版本的regulonDB v10.8。1.3.1版的更改BUG修复-修复了数据库的URL。解决了https://github.com/ComunidadBioInfo/regutools/issues/33。版本1.1.3的变化用户可见的重大变化-软件包CITATION文件已经更新，现在在regutools上的在线论文可以在https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bioinformatics/btaa575/5861528上获得，DOI 10.1093/bioinformatics/btaa575和PMID: 32573705。文档更新-包括roxygen版本更新和文档是建立在新的roxygen版本下。版本1.1.1的变化用户可见的重大变化-包CITATION文件已经更新，在正则工具上的预打印可以在https://www.biorxiv.org/content/10.1101/2020.04.29.068551v1获得，DOI为https://doi.org/10.1101/2020.04.29.068551。0.99.14版本的变化用户可见的重大变化-现在将connect_database()作为bfc参数而不是路径。在0.99.13版本的变化显著用户可见的变化-现在connect_database()使用BiocFileCache::BiocFileCache()和BiocFileCache::bfcrpath()从Dropbox下载数据库时，它不可从AnnotationHub::query()和缓存文件，所以你不必重新下载它多次。0.99.12版本的变化用户可见的重大变化-文档网站现在可在http://comunidadbioinfo.github.io/regutools/。它使用GitHub Actions和pkgdown在主分支(bioc-devel)上的每次提交都会更新。 Changes in version 0.99.11 BUG FIXES - Manual adjustment for lines > 80 chr in parameters description. Changes in version 0.99.10 BUG FIXES - Bump Version to run R CMD check Changes in version 0.99.9 BUG FIXES - Add a suggested biocView Transcription. Changes in version 0.99.8 BUG FIXES - Change biocViews from AnnotationData to Software Changes in version 0.99.7 BUG FIXES - Fix a bug in pkgdown that is currently resolved by Rscript -e 'remotes::install_github("r-lib/pkgdown#1276")'. Details at https://github.com/r-lib/pkgdown/pull/1276 and related issues. Changes in version 0.99.6 BUG FIXES - Manual adjust for some lines > 80 characters Changes in version 0.99.5 BUG FIXES - Reindent lines and try line-wrapping for lines > 80 characters Changes in version 0.99.4 NEW FEATURES - Added a NEWS.md file to track changes to the package. Changes in version 0.99.3 SIGNIFICANT USER-VISIBLE CHANGES - DESCRIPTION file now contains an article-like summary in the field regutools package Description. - DESCRIPTION was updated to show only one maintainer as required by //www.andersvercelli.com/developers/package-guidelines/#description BUG FIXES - Fix a bug in the function get_regulatory_network() related with Cytoscape conection. Changes in version 0.99.2 SIGNIFICANT CHANGES - Removed the regutools.Rproj file (you can still have it, but it's not version controlled). - Bump R depends to 4.0 as required by BiocCheck. We'll see if it breaks. Changes in version 0.99.1 BUG FIXES - Address as many errors, warnings and notes as possible from //www.andersvercelli.com/spb_reports/regutools_buildreport_20200302121040.html#malbec2_check_anchor. For the Windows error, it's likely related to mode = "w" versus mode = "wb" for utils::download.file() as in https://github.com/LieberInstitute/spatialLIBD/commit/7ac24dc72cc75e42c9af8382c661517f4a64f08d. Changes in version 0.99.0 NEW FEATURES - Submitted to Bioconductor