## ----------------------------------------------------------------------------- 库(SCANVIS)数据(SCANVISexamples)名称(gen19 ) ## ----------------------------------------------------------------------------- 头(gbm3) gbm3.scn < -SCANVISscan (sj = gbm3创= gen19 Rcut = 5, bam = NULL, samtools = NULL)头(gbm3.scn ) ## ----------------------------------------------------------------------------- 头(gbm3.vcf) gbm3.scnv < -SCANVISlinkvar (gbm3.scn、gbm3.vcf gen19) gbm3。scnv [23 ,] ## ----------------------------------------------------------------------------- gbm3。scnv [38:51 ,] ## ----------------------------------------------------------------------------- gbm3.scnvp < -SCANVISlinkvar (gbm3.scn gbm3.vcf gen19, p = 100)表(gbm3.scnv [' passedMUT '])表(gbm3.scnvp [passedMUT ']) ## ----------------------------------------------------------------------------- 票面价值(mfrow = c (2, 1), 3 = c (1, 1, 1, 1) vis.lusc1 < -SCANVISvisual(“PPA2”、gen19 LUSC [[1]], TITLE =名字(LUSC) [1], full.annot = TRUE, bam = NULL, samtools = NULL)vis.lusc2 < -SCANVISvisual (PPA2, gen19 LUSC [[2]], TITLE =名字(LUSC) [2], full.annot = TRUE, bam = NULL, samtools = NULL, USJ = ' RRS ') ## ----------------------------------------------------------------------------- ASJ <多边形(vis.lusc2 [[2]]) [1:3] c2 < -SCANVISvisual(“PPA2”、gen19 LUSC [[2]], TITLE =名字(LUSC) [2], full.annot = TRUE, SJ.special = ASJ ) ## ----------------------------------------------------------------------------- vis.lusc。合并后的< -SCANVISvisual (PPA2, gen19 LUSC, TITLE =两个LUSC样本,合并,full.annot = TRUE ) ## ----------------------------------------------------------------------------- sessionInfo ()