# #——style-knitr eval = TRUE,呼应= FALSE,结果= "飞机 "-------------------- BiocStyle:乳胶 () ## ---- LibraryPreload -------------------------------------------------------- 库(TargetSearch)库(TargetSearchData) # #——cdffiles -------------------------------------------------------------- cdfPath < - tsd_data_path () dir (cdfPath、模式= " cdf $") ## ---- 样品 --------------------------------------------------------------- 样本。all <- ImportSamplesFromDir(cdfPath) RIpath(samples.all) <- "."# #——边缘 ------------------------------------------------------------------- rimLimits < - ImportFameSettings (tsd_file_path(“rimLimits.txt”))rimLimits # #——ricorrect ------------------------------------------------------------- RImatrix < RIcorrect(样本。rimLimits, writeCDF4path = FALSE,窗口= 15,pp.method =“复印机”,IntThreshold = 50) RImatrix # #——isRIMarker ------------------------------------------------------------ isRIMarker < -代表(FALSE,长度(samples.all)) isRIMarker [c(1、6、11)]< -真正的# #——updateRImatrix2 ------------------------------------------------------- RImatrix2 < - RImatrix RImatrix2 [2:5] < - RImatrix [1] RImatrix2 [7:10) < - RImatrix [6] RImatrix2 [,12:15) < - RImatrix[11] # #——updateRImatrix -------------------------------------------------------- RImatrix2 < - RImatrix z < cumsum (as.numeric (isRIMarker)),(我在独特(z)) RImatrix2 (z = =我)< - RImatrix [z = =我][1]RImatrix2 # #——fixRI ----------------------------------------------------------------- fixRI(样本。rimLimits, (! isRIMarker RImatrix2 )) ## ---- 最后 --------------------------------------------------------------- < - samples.all[样品!isRIMarker] RImatrix < - RImatrix2, ! isRIMarker # #——sessionInfo,结果=“黑名单”,回声= FALSE ------------------------------- toLatex (sessionInfo ())