# #——sampleDataset消息= FALSE,警告= FALSE ------------------------------ 库(GenomicRanges)图书馆(SummarizedExperiment)图书馆(蜂鸟)数据(exampleHummingbird) # #——sampleDataset_initialMatrices -------------------------------------------- 头(normM) # #——sampleDataset_initialpos ------------------------------------------------- 头(pos) # #——sampleDataset_creatingSE ------------------------------------------------- pos < - pos [1] assaysControl < -列表(normM = normM,normUM = normUM) assaysCase <- list(abnormM = abnormM, abnormUM = abnormUM) exampleSEControl <- summarizeexperimental (assaysControl, rowRanges = GPos("chr29"， pos)) exampleSECase <- summarizeexperimental (assaysCase, rowRanges = GPos("chr29"，pos )) ## ---- sampleDataset_pos -------------------------------------------------------- rowRanges (exampleSEControl) rowRanges (exampleSECase) # #——sampleDataset_norm ------------------------------------------------------- 头(化验(exampleSEControl)[[“normM”]])(化验(exampleSEControl)[[“normUM "]]) ## ---- sampleDataset_abnorm ----------------------------------------------------- 头(化验(exampleSECase)[[“abnormM”]])头(化验(exampleSECase)[[“abnormUM”]])# #——蜂鸟 -------------------------------------------------------------- 库(蜂鸟)数据(exampleHummingbird) # #——hummingbird_em ----------------------------------------------------------- emInfo < - hummingbirdEM (experimentInfoControl = exampleSEControl experimentInfoCase = exampleSECase binSize = 40) emInfo # #——hummingbird_postAdjustment ----------------------------------------------- postAdjInfo < - hummingbirdPostAdjustment (experimentInfoControl = exampleSEControl,experimentInfoCase = exampleSECase emInfo = emInfo minCpGs = 10,最小长度= 100,maxGap = 300) postAdjInfo dmr # #——hummingbird_graph美元 -------------------------------------------------------- hummingbirdGraph (experimentInfoControl = exampleSEControl experimentInfoCase = exampleSECase postAdjInfoDMRs = postAdjInfo dmr美元,coord1 = 107991, coord2 = 108350) # #——sessionInfo呼应= TRUE, eval = TRUE ---------------------------------------- sessionInfo ()