## ----设置,包括= false --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- knitr::opts_chunk$set(fig.width = 7, fig.height = 7, echo = FALSE, warning = FALSE, message = FALSE, dev = 'png',out.extra ='style =“边框宽度:0;”)## -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- rep1_df <- idr2d:::chipseq$rep1_df rep2_df <-IDR2D ::: chipseq $ rep2_df ## ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------库(DT)标题<-htmltools :: withtags(表)(class ='display',thead(tr(th(“染色体”),th(“启动坐标”),th(“ end coortion”),th(“ scorce”)))))dataTable(rep1_df [seq_len(seq_len(seq_len)(min(nrow(rep1_df),1000)),],容器=标题,rownames = false,options = list(searching = false))%>%格式化(“ value”,3)## -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------数据(rep2_df [seq_len(min(nrow(rep2_df),1000))),container = header,rownames = false,options = list(搜索= false))%>%FormatRound(“ value”,3)## ----- echo = true -------------------------------------------------------------------------------------------------------------------库(IDR2D)## ---- echo = true ---------------------------------------------------------------------------------------------------------IDR_RESULTS <-estimate_idr1d(rep1_df,rep2_df,value_transformation =“ log”)rep1_idr_df <-IDR_Results $ rep1_df ## -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------chr < - start < - end < - rank rank <-rep_rank < - value < - rep_value < - idr <-null header <-htmltools :: withtags(table ='display ='display',thead(tr(th(th(“”)chr。”),Th(“启动坐标”),Th(“端坐标”),Th(“等级为r1”),th(“等级为r2”),th(“ r1中的变换值”),th(“ r2中的变换值”),th(“ idr”)))))df <-dplyr :: select(rep1_idr_df,chr,start,start,end,stark,stark,rep_rank,value,value,rep_value,idr)dataTable(df [seq_lenen(min(nrow(df),1000)),],rownames = false,options = list(searching = false),container = header)%>%格式化(c(“ value”,“ rep_value”,“ idr”),3)## ---- echo = true ------------------------------------------------------------------------------------------------------------------------------------------------------- summary(idr_results) ## ---- echo = TRUE------------------------------------------------------------- draw_idr_distribution_histogram(rep1_idr_df) ## ---- echo = TRUE------------------------------------------------------------- draw_rank_idr_scatterplot(rep1_idr_df) ## ---- echo = TRUE------------------------------------------------------------- draw_value_idr_scatterplot(rep1_idr_df)