参数< -列表(测试= FALSE ) ## ---- 包括= FALSE --------------------------------------------------------- knitr: opts_chunk美元集(崩溃= TRUE,发表评论 = "#>" ) 库(BiocStyle) # # = FALSE,警告,消息= FALSE --------------------------------------------- # 加载所需的包库(spicyR)库(ggplot2 ) ## ---- eval = FALSE ------------------------------------------------------------ # 如果(!需要(“BiocManager”))# install.packages (BiocManager) # BiocManager::安装(“spicyR ") ## ----------------------------------------------------------------------------- 数据(“diabetesData”)diabetesData cellSummary (diabetesData) imagePheno (diabetesData) # #——消息= FALSE ------------------------------------------------------------ spicyTestPair < -辣(diabetesData、条件=“舞台”,主题=“案例”,从=“测试版”=“δ”)topPairs (spicyTestPair) # # - eval = FALSE --------------------------------------------------------------- # spicyTest < -辣(diabetesData #条件=“阶段”,#主题= " ") ## ----------------------------------------------------------------------------- 数据(“spicyTest ") ## ----------------------------------------------------------------------------- spicyTest topPairs (spicyTest ) ## ----------------------------------------------------------------------------- signifPlot (spicyTest休息= c (3, 3, 0.5), marksToPlot = c(“阿尔法”、“测试版”、“伽马”、“三角洲”,“B”,“naiveTc”、“Th”、“Tc”、“中性粒细胞”,“巨噬细胞 ")) ## ----------------------------------------------------------------------------- sessionInfo ()