# # # R代码从装饰图案的maqcNotes来源。Rnw“# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块1号:lkdat # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #库(MAQCsubset)数据(afxsubRMAES) afxsubRMAES pd = pData (afxsubRMAES)表(pd网站美元,pd桑普美元)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块2号:dopro # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # setClass (“proboStruct”,表示(称为=“调用”),#包含=“列表”)# setMethod(“秀”,“proboStruct”,函数(对象){#猫(“proboStruct实例由:\ n”) #打印(object@call) #}) # setMethod(“阴谋”、“proboStruct”函数(x, y, xlim = c(3、3), # =“黑人”,上校…){#地块(x [[1]] $ leftinds] [x, x [[2]] [x leftinds美元],xlab =名字(x) [1], # ylab (x)[2] =名称,类型=“l”=上校,上校xlim = xlim…) #线(x [[1]] leftinds美元- x, x [[2]] [- x leftinds美元],=上校,上校…)#})鼻子=函数(es、站点= 1,ABp = 0.001, CDp =。01,mmrad = 100){要求(genefilter) mcall = match.call() #假定样本标记,B, C, D在MAQC毫米= function (x, rad){#移动意味着开始=上限(rad / 2)停止=地板(长度(x) - (rad / 2)酸式焦磷酸钠(启动,停止,函数(i)的意思是(x [(i-floor (rad / 2)): (i +地板(rad / 2)))))} ess = es [es网站= =网站美元]essab = ess [, ess桑普美元% % C (“A”、“B”)] essab $桑普=因素(essab桑普美元)esscd = ess [, ess桑普美元% % C (“C”、“D”)] esscd桑普美元= tt因素(esscd桑普美元)= rowttests (exprs (essab) essab桑普美元)L =, (tt p < ABp & tt dm < 0美元)R = (tt $ p < ABp & tt $ dm > 0) ttcd = rowttests (exprs (esscd) esscd桑普美元)ABL = tt dm [L] CDL = ttcd dm美元[L] ABR = tt dm [R] CDR = ttcd dm美元[R] NN =列表(ttab = tt, ttcd = ttcd ABL = (ABL), cdokL = 1 * (CDL < 0)[秩序(ABL)], ABR = (ABR), dcokR = 1 * (CDR > 0)(顺序(ABR)))‘a - b = c (ONR <毫米(NN ABL美元,mmrad)毫米(NN $ ABR mmrad))“P (SCMT | a - b) ' = c(毫米(NN cdokL美元,mmrad)毫米(NN dcokR美元,mmrad))新(“proboStruct”,叫= mcall列表(“a - b”=“a - b”,“P (SCMT | a - b)”=“P (SCMT | a - b)”, leftinds = 1:长度(ONR)))} NN1 =长鼻(afxsubRMAES) NN2 =长鼻(afxsubRMAES网站= 2)NN3 =长鼻(afxsubRMAES网站= 3)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块3号:dopl # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #情节(NN1 lwd = 2)线(NN2 [[1]], NN2[[2]],坳=“绿色”,lwd = 2)线(NN3 [[1]], NN3[[2]],坳=“蓝色”,lwd = 2)传说(-2.5、。9 lty = 1, lwd = 2,传说= c(“网站1”,“网站2”,“网站3”),坳= c(“黑”、“绿色”、“蓝色”))